About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2816703_2828408_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2816703 - 2828408
Intron Length:
11706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTGTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTCTTTTTATT
Flanking Amino Acid:
FDAHVEFNIGWVEPALTRIK
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.9
80.7
36.6
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
49.4
0.03
1.6
63.82
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030590
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042909
2805244 - 2879049
73806