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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2828584_2830736_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2828584 - 2830736
Intron Length:
2153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAACACG
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTAATG
Flanking Amino Acid:
IILVDDNSDNVELKFNLDQY
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1
57.4
41.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
33.7
-1.9
2.9
37.4
41.3
Minor BPS
69.9
0.49
1.6
73.75
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030590
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042909
2805244 - 2879049
73806