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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_2853008_2878808_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2853008 - 2878808
Intron Length:
25801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
LEEVVYNQLNGLAKPMGLVE
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.1
50.9
46
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
79.1
0.65
0.8
78.4
29.3
Minor 5ss
34.8
-1.7
3.5
43.7
45.9
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030590
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042909
2805244 - 2879049
73806