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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3016542_3023031_R

Intron Information:

Intron Rank:
134844
Intron Class:
major
Intron Phase:
Intron Coordinates:
3016542 - 3023031
Intron Length:
6490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCATTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TGTTCCTCACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
73.7
0.53
0.9
71.1
39.6
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
58.7
0.25
1.8
71.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019881
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020745
3016401 - 3026480
10080