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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3022805_3023031_R

Intron Information:

Intron Rank:
134846
Intron Class:
major
Intron Phase:
Intron Coordinates:
3022805 - 3023031
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
AACCTAATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAT
U12 Branch Point Sequence:
ATGACTAAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
77.7
31.7
Major BPS
73.1
0.57
1
71.9
31.3
Major PPT
66.8
0.38
1
55.9
42.8
Minor 5ss
41.3
-1
2.5
47.2
43.7
Minor BPS
47.8
-0
1.9
67.85
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019881
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024114
3022775 - 3026480
3706