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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3023223_3026260_R

Intron Information:

Intron Rank:
134845
Intron Class:
major
Intron Phase:
Intron Coordinates:
3023223 - 3026260
Intron Length:
3038

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CAGTTTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
ATTTCTTTAGAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
79.2
0.72
1
75
40
Major PPT
75.7
0.58
0.8
73.9
36.5
Minor 5ss
41.5
-0.9
2.9
50
46.3
Minor BPS
66.8
0.61
1.6
83.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019881
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020745
3016401 - 3026480
10080
ENSAPLT00000024114
3022775 - 3026480
3706