About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3033285_3034013_R

Intron Information:

Intron Rank:
135799
Intron Class:
major
Intron Phase:
Intron Coordinates:
3033285 - 3034013
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGG
5'SS Class:
major
3'SS Sequence:
TACCCTGCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGTAC
U12 Branch Point Sequence:
GTACCCTGCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.4
44.3
Major BPS
42.6
-0.4
1.4
37
42
Major PPT
63
0.29
1
55
39.8
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.5
-0
1.9
63.02
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039242
3032772 - 3034946
2175