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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3034947_3035398_R

Intron Information:

Intron Rank:
135798
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
3034947 - 3035398
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAACGTG
5'SS Class:
major
3'SS Sequence:
CCTCCCAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCTCCCAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.4
44.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
56.6
0.15
0.9
51.8
30
Minor 5ss
38.9
-1.3
3.5
46.6
48.8
Minor BPS
48.5
-0
2.1
69.58
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020456
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034190
3034436 - 3035770
1335