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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3058059_3060384_F

Intron Information:

Intron Rank:
142236
Intron Class:
major
Intron Phase:
Intron Coordinates:
3058059 - 3060384
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCGCAT
U12 Branch Point Sequence:
TGTCTCGCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
57.6
0.19
1.4
69
38.9
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
41.3
-0.5
2.2
61.88
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026593
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025679
3057909 - 3061945
4037