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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3160978_3165550_R

Intron Information:

Intron Rank:
152259
Intron Class:
major
Intron Phase:
Intron Coordinates:
3160978 - 3165550
Intron Length:
4573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATACTAATTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATTATACTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.1
0.47
1
63.1
41.3
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
49.2
0.02
1.9
72.98
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029488
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024080
3160341 - 3191157
30817