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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3165908_3167157_F

Intron Information:

Intron Rank:
141059
Intron Class:
major
Intron Phase:
Intron Coordinates:
3165908 - 3167157
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCTTA
5'SS Class:
major
3'SS Sequence:
CTGTTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
CTATTATTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.3
37.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.7
0.76
0.8
79.2
32.9
Minor 5ss
40.9
-1
3.2
55.4
48.8
Minor BPS
50.6
-0
1.9
63.84
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036815
3165450 - 3168095
2646