Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3165927_3190886_R

Intron Information:

Intron Rank:

152260

Intron Class:

major

Intron Phase:

Intron Coordinates:

3165927 - 3190886

Intron Length:

24960

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCTGC

5'SS Class:

major

3'SS Sequence:

TTTGACGTTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAC

U12 Branch Point Sequence:

TTTGTCTGACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.3

64.1

43.4

Major BPS

77.7

0.69

0.9

69.1

37.9

Major PPT

77.6

0.62

73.6

41.5

Minor 5ss

39.6

-1.2

2.9

51.1

45.5

Minor BPS

0.01

1.9

73.47

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029488

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024080

3160341 - 3191157

30817