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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3167246_3167428_F

Intron Information:

Intron Rank:
141060
Intron Class:
major
Intron Phase:
Intron Coordinates:
3167246 - 3167428
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTCCAC
5'SS Class:
major
3'SS Sequence:
CCTGCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ACATATTCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.1
52.3
40.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.9
0.7
0.8
72.1
37.9
Minor 5ss
31.7
-2.1
3.2
41.6
45.1
Minor BPS
45
-0.3
1.9
60.26
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025990
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036815
3165450 - 3168095
2646