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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3187539_3188011_R

Intron Information:

Intron Rank:
143193
Intron Class:
major
Intron Phase:
Intron Coordinates:
3187539 - 3188011
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCAGTG
5'SS Class:
major
3'SS Sequence:
CATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTACTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
61
44.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
38.5
-1.3
3.6
55.8
48.4
Minor BPS
69.8
0.7
1.3
77.11
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024386
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040078
3186599 - 3188543
1945