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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3196909_3199123_R

Intron Information:

Intron Rank:
152258
Intron Class:
major
Intron Phase:
Intron Coordinates:
3196909 - 3199123
Intron Length:
2215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACACT
5'SS Class:
strong_major
3'SS Sequence:
TGATTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTACCTGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
77.8
36.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
80.2
0.68
0.9
77.1
41.8
Minor 5ss
41.4
-1
3
58.6
45.7
Minor BPS
49.8
0.07
2
72.77
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029488
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022232
3190733 - 3199926
9194