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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3202378_3237972_R

Intron Information:

Intron Rank:
142717
Intron Class:
major
Intron Phase:
Intron Coordinates:
3202378 - 3237972
Intron Length:
35595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATAATG
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AATGTAGTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.5
37.1
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
88.1
0.86
0.7
80.5
31.5
Minor 5ss
31.7
-2.1
3
40
45.6
Minor BPS
39.5
-0.8
2.3
50.21
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024058
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043717
3202331 - 3277256
74926
ENSAPLT00000037684
3202331 - 3277256
74926