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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3238244_3238325_R

Intron Information:

Intron Rank:
142723
Intron Class:
major
Intron Phase:
Intron Coordinates:
3238244 - 3238325
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.9
0.67
0.8
74.7
28.8
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
68.5
0.66
1.1
74.5
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024058
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043717
3202331 - 3277256
74926