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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_324942_395215_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
324942 - 395215
Intron Length:
70274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAACC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCTAATTA
Flanking Amino Acid:
MFAGIVPLAMVSDRCDSIFV
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
65.2
39
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
33.5
-1.9
3.2
41.3
39.2
Minor BPS
59.1
0.28
1.9
73.44
38.9

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021986
139111 - 408967
269857
ENSAPLT00000019881
201355 - 408967
207613