About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3269186_3274453_R

Intron Information:

Intron Rank:
142719
Intron Class:
major
Intron Phase:
Intron Coordinates:
3269186 - 3274453
Intron Length:
5268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCCTATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67.2
0.39
1
62.4
37.7
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
59.7
0.38
1.5
68.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024058
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042849
3268858 - 3277256
8399