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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3274682_3276496_R

Intron Information:

Intron Rank:
142720
Intron Class:
major
Intron Phase:
Intron Coordinates:
3274682 - 3276496
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAAAGTG
5'SS Class:
major
3'SS Sequence:
ATTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
63.2
41.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.2
0.75
0.8
77.3
36.3
Minor 5ss
33
-1.9
3.5
38.5
46.6
Minor BPS
68.8
0.67
1.6
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024058
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042849
3268858 - 3277256
8399