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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3308514_3309382_R

Intron Information:

Intron Rank:
141062
Intron Class:
major
Intron Phase:
Intron Coordinates:
3308514 - 3309382
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGTGC
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
ACTTTCTCAGGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
60.9
40.9
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
81.8
0.72
0.7
76.7
25.3
Minor 5ss
31.2
-2.2
3.2
32.5
42.6
Minor BPS
45.7
-0.3
2
56.27
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023216
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042430
3308416 - 3312361
3946