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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3309501_3309778_R

Intron Information:

Intron Rank:
141061
Intron Class:
major
Intron Phase:
Intron Coordinates:
3309501 - 3309778
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.6
0.62
0.7
69.6
31.2
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023216
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037081
3301379 - 3310275
8897