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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3309501_3311097_R

Intron Information:

Intron Rank:
141055
Intron Class:
major
Intron Phase:
Intron Coordinates:
3309501 - 3311097
Intron Length:
1597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.8
90.9
28.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
77.6
0.62
0.7
69.6
31.2
Minor 5ss
45.3
-0.5
2.9
66
45.2
Minor BPS
69.7
0.7
1.7
88.99
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023216
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042430
3308416 - 3312361
3946
ENSAPLT00000034278
3301379 - 3319135
17757