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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3311146_3312232_R

Intron Information:

Intron Rank:
141056
Intron Class:
major
Intron Phase:
Intron Coordinates:
3311146 - 3312232
Intron Length:
1087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTACT
5'SS Class:
major
3'SS Sequence:
TTGCATCAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTCCTTGACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
75.5
40.4
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
64.3
0.32
1
60
40.4
Minor 5ss
42.8
-0.8
2.9
61.5
42.8
Minor BPS
51
0.03
1.8
65.35
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023216
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042430
3308416 - 3312361
3946
ENSAPLT00000034278
3301379 - 3319135
17757