Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3312362_3318414_R

Intron Information:

Intron Rank:

141057

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3312362 - 3318414

Intron Length:

6053

Sequence Information:

Terminal Dinucleotides:

GT-GG

5'SS Sequence:

CAG|GTATGTCTG

5'SS Class:

strong_major

3'SS Sequence:

TTCCTTTCCACGG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACCTAAA

U12 Branch Point Sequence:

GGCACCTAAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

74.4

41.9

Major BPS

63.9

0.35

63.9

30.3

Major PPT

45.4

-0.2

3.2

71.7

32.9

Minor 5ss

43.9

-0.7

2.8

58.1

46.5

Minor BPS

54.7

0.14

1.8

61.73

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034278

3301379 - 3319135

17757