Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3318625_3319057_R

Intron Information:

Intron Rank:

141058

Intron Class:

major

Intron Phase:

Intron Coordinates:

3318625 - 3319057

Intron Length:

433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGCTTTT

5'SS Class:

major

3'SS Sequence:

GTGTTTGTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCTGAT

U12 Branch Point Sequence:

TTTTCCTTCCTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.2

78.8

38.3

Major BPS

0.27

1.3

53.3

44.2

Major PPT

73.4

0.53

65.1

45.5

Minor 5ss

51.1

0.04

2.9

75.5

40.6

Minor BPS

-0.2

3.6

77.77

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034278

3301379 - 3319135

17757