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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3356310_3469951_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3356310 - 3469951
Intron Length:
113642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACGAATTTAAAG
Flanking Amino Acid:
GFVPMLRRLQKDMSLKPQER
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
46
-0.4
1.7
44.57
41.2

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032393
3356160 - 3849921
493762
ENSAPLT00000025396
3356160 - 3849921
493762
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000033523
3356160 - 3849921
493762