About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3470153_3557315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3470153 - 3557315
Intron Length:
87163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAA
U12 Branch Point Sequence:
TCTCCTTTTTCC
Flanking Amino Acid:
KKLPLKLTKQMKVPTSRSGR
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
37.4
Major BPS
58
0.2
1.2
65.3
38.6
Major PPT
78.3
0.64
0.7
70.4
30.7
Minor 5ss
27.1
-2.6
3.7
36.6
47.9
Minor BPS
41.3
-0.7
3.5
63.67
42.2

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000033523
3356160 - 3849921
493762
ENSAPLT00000032393
3356160 - 3849921
493762