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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3557418_3568540_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3557418 - 3568540
Intron Length:
11123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
CTTGCATTACTT
Flanking Amino Acid:
RSSSRDRLSDSSAQSLSGRG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
50.4
0.09
2
72.41
45

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000033523
3356160 - 3849921
493762