About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_357821_395215_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
357821 - 395215
Intron Length:
37395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTCCTAATTA
Flanking Amino Acid:
CKSADEDVIKVSDRCDSIFV
Intron Amino Acid Position:
480

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
59.1
0.28
1.9
73.44
38.9

Associated Gene:

Gene:
TMEM132B
Ensembl Gene ID:
ENSAPLG00000011379
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011847
139111 - 408967
269857