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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3674830_3754338_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3674830 - 3754338
Intron Length:
79509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTACGTTTGATA
Flanking Amino Acid:
CDSESDVDDKTSTELELTRI
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79
0.65
0.9
73.9
36.8
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
50.6
0.01
1.7
63.95
36.6

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000033523
3356160 - 3849921
493762
ENSAPLT00000032393
3356160 - 3849921
493762
ENSAPLT00000025396
3356160 - 3849921
493762