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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_37542_39141_R

Intron Information:

Intron Rank:
131420
Intron Class:
major
Intron Phase:
Intron Coordinates:
37542 - 39141
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TACTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
79.7
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
44.9
-0.6
3.2
63.2
43.8
Minor BPS
74.4
0.76
1.1
75.62
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017907
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034788
37087 - 40612
3526