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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_37542_39843_R

Intron Information:

Intron Rank:
131422
Intron Class:
major
Intron Phase:
Intron Coordinates:
37542 - 39843
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TACTTTTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.4
37.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
87.5
0.84
0.6
81.5
30.5
Minor 5ss
36.9
-1.5
2.7
44.1
38.5
Minor BPS
74.4
0.76
1.1
75.62
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017907
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040838
37087 - 40612
3526