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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3831987_3836420_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3831987 - 3836420
Intron Length:
4434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTTTATTCACA
Flanking Amino Acid:
LDNPYFRHSNTSNPIDVAGR
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
74.9
35.3
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
31.3
-2.1
3.2
40.8
38.7
Minor BPS
55.5
0.17
2
72.91
38.8

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033523
3356160 - 3849921
493762