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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3833016_3836420_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3833016 - 3836420
Intron Length:
3405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACT
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTTTATTCACA
Flanking Amino Acid:
GSLQGAFQPKTSNPIDVAGR
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
71.6
38.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
34.4
-1.8
3.3
50.3
45.7
Minor BPS
55.5
0.17
2
72.91
38.8

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000032393
3356160 - 3849921
493762
ENSAPLT00000025396
3356160 - 3849921
493762