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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3837102_3838007_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3837102 - 3838007
Intron Length:
906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTCCATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTAATCTAAATT
Flanking Amino Acid:
VSDPYRPPVRKPGKWCAVHV
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
71.6
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.6
0.76
0.8
77.8
29.3
Minor 5ss
36.3
-1.5
2.7
39
40.2
Minor BPS
60.3
0.4
1.7
76.97
39.8

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000033523
3356160 - 3849921
493762
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000032393
3356160 - 3849921
493762
ENSAPLT00000025396
3356160 - 3849921
493762
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000040166
3356160 - 3849921
493762