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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3838080_3839407_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3838080 - 3839407
Intron Length:
1328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
TATCATTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATCATTTGACA
Flanking Amino Acid:
QIYHHQQKIKQMQLDPHKLE
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73
0.52
1
68.6
41.5
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
60.1
0.31
1.5
69.94
35.5

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025396
3356160 - 3849921
493762
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000033523
3356160 - 3849921
493762
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000032393
3356160 - 3849921
493762