Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3839541_3843576_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3839541 - 3843576

Intron Length:

4036

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTCTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTGAA

U12 Branch Point Sequence:

TGCTACTGAACT

Flanking Amino Acid:

DLARPLFSTTGATHPATTPF

Intron Amino Acid Position:

559

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.1

Major BPS

74.4

0.61

0.9

63.6

35.5

Major PPT

84.5

0.78

0.8

77.2

37.1

Minor 5ss

30.9

-2.2

3.6

45.9

49.3

Minor BPS

63.5

0.5

1.7

79.08

42.4

Associated Gene:

Gene:

FBRSL1

Ensembl Gene ID:

ENSAPLG00000002858

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024423

3356160 - 3849921

493762

ENSAPLT00000040166

3356160 - 3849921

493762

ENSAPLT00000002895

3469958 - 3849921

379964

ENSAPLT00000033523

3356160 - 3849921

493762

ENSAPLT00000032393

3356160 - 3849921

493762

ENSAPLT00000025396

3356160 - 3849921

493762