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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3839541_3846400_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3839541 - 3846400
Intron Length:
6860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
GCCATTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
DLARPLFSTTAHNNIFTHKD
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67.5
0.39
0.9
58.4
41.8
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017403
3469958 - 3849921
379964