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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3843655_3846400_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3843655 - 3846400
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
GCCATTATTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
SSFLPTNHLAAHNNIFTHKD
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
67.5
0.39
0.9
58.4
41.8
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040166
3356160 - 3849921
493762