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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3846642_3848687_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3846642 - 3848687
Intron Length:
2046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TTCACGTAAACC
Flanking Amino Acid:
SLSKDDRDKERDLMDKNRHS
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
89.2
0.88
0.7
84
30.3
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
48.6
-0.1
2.4
66.76
45

Associated Gene:

Gene:
FBRSL1
Ensembl Gene ID:
ENSAPLG00000002858
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025396
3356160 - 3849921
493762
ENSAPLT00000024423
3356160 - 3849921
493762
ENSAPLT00000040166
3356160 - 3849921
493762
ENSAPLT00000017403
3469958 - 3849921
379964
ENSAPLT00000033523
3356160 - 3849921
493762
ENSAPLT00000002895
3469958 - 3849921
379964
ENSAPLT00000032393
3356160 - 3849921
493762