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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3886023_3892309_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3886023 - 3892309
Intron Length:
6287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
ESGQVSLEDTSTNGTVINKL
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1.2
79.9
36
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
41.1
-1
3.1
58.6
46
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
CHFR
Ensembl Gene ID:
ENSAPLG00000002931
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002996
3883762 - 3904319
20558