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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3895521_3895809_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3895521 - 3895809
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AATTCTTTCATT
Flanking Amino Acid:
ICQELLHDCVSLQPCMHTFC
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
84.8
0.78
0.9
76.9
42.1
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
63.9
0.52
1.7
79.18
37.3

Associated Gene:

Gene:
CHFR
Ensembl Gene ID:
ENSAPLG00000002931
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002996
3883762 - 3904319
20558