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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3898679_3899415_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3898679 - 3899415
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATTTGGG
5'SS Class:
major
3'SS Sequence:
TTCTTCTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTCTTCTCATTA
Flanking Amino Acid:
ACFGCLAPFCEINLGDKCLD
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
54.3
42.8
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
77.8
0.63
0.8
78.8
28.4
Minor 5ss
38.4
-1.3
3.1
46.5
44.1
Minor BPS
52.9
0.09
1.8
66.67
40.6

Associated Gene:

Gene:
CHFR
Ensembl Gene ID:
ENSAPLG00000002931
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002996
3883762 - 3904319
20558