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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3899487_3900427_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3899487 - 3900427
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
NNHYESDILKDYLASRGLTW
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
88
0.86
0.6
87.9
22.2
Minor 5ss
47.5
-0.2
2.8
64.7
46.6
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
CHFR
Ensembl Gene ID:
ENSAPLG00000002931
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002996
3883762 - 3904319
20558