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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3900799_3901945_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3900799 - 3901945
Intron Length:
1147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGATA
5'SS Class:
major
3'SS Sequence:
CCTCTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATTAATAAACA
Flanking Amino Acid:
RQNIPVAELPVTVTSRPDCY
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.1
0.7
0.7
76.5
25.5
Minor 5ss
29
-2.4
3.4
38.5
46.8
Minor BPS
47.8
-0.1
2.1
62.81
42.9

Associated Gene:

Gene:
CHFR
Ensembl Gene ID:
ENSAPLG00000002931
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002996
3883762 - 3904319
20558