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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3913477_3914008_R

Intron Information:

Intron Rank:
133495
Intron Class:
major
Intron Phase:
Intron Coordinates:
3913477 - 3914008
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTATTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.7
41.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.9
0.76
0.9
80
37.3
Minor 5ss
42.1
-0.9
3.1
60.2
44.1
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019084
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043705
3912739 - 3943652
30914