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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3914255_3917456_R

Intron Information:

Intron Rank:
133496
Intron Class:
major
Intron Phase:
Intron Coordinates:
3914255 - 3917456
Intron Length:
3202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTACTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TGATCTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
83.9
0.76
0.8
81.5
34.8
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
64.2
0.52
1.6
77.22
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019084
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043705
3912739 - 3943652
30914