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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3917621_3918903_R

Intron Information:

Intron Rank:
133497
Intron Class:
major
Intron Phase:
Intron Coordinates:
3917621 - 3918903
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCACG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1.1
66.3
45.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
39.3
-1.2
2.8
42
44.3
Minor BPS
50.1
0.08
1.8
72.12
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019084
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043705
3912739 - 3943652
30914