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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_3919007_3919106_R

Intron Information:

Intron Rank:
133498
Intron Class:
major
Intron Phase:
Intron Coordinates:
3919007 - 3919106
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATGTTCTGAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1.1
80
33
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72
0.49
1
66
39.9
Minor 5ss
31.7
-2.1
3
42.5
44.2
Minor BPS
53.2
0.18
1.7
70.77
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019084
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043705
3912739 - 3943652
30914